Publications and Patents

Publications

Three-dimensional intact-tissue sequencing of single-cell transcriptional states.

Wang X, Allen WE, Wright MA, Sylwestrak EL, Samusik N, Vesuna S, Evans K, Liu C, Ramakrishnan C, Liu J, Nolan GP@, Bava FA@, Deisseroth K.@
Science. 2018 Jun 21. pii: eaat5691. doi: 10.1126/science.aat5691.
PMID:29930089


Whole-genome sequencing of Atacama skeleton shows novel mutations linked with dysplasia.

Bhattacharya S, Li J, Sockell A, Kan MJ, Bava FA, Chen SC, Ávila-Arcos MC, Ji X, Smith E, Asadi NB, Lachman RS, Lam HYK, Bustamante CD, Butte AJ, Nolan GP.
Genome Res. 2018 Apr;28(4):423-431. doi: 10.1101/gr.223693.117. Epub 2018 Mar 22.
PMID:29567674


High-throughput precision measurement of subcellular localization in single cells.

Burns TJ, Frei AP, Gherardini PF, Bava FA, Batchelder JE, Yoshiyasu Y, Yu JM, Groziak AR, Kimmey SC, Gonzalez VD, Fantl WJ, Nolan GP.
Cytometry A. 2017 Feb;91(2):180-189. doi: 10.1002/cyto.a.23054. Epub 2017 Jan 17.
PMID:28094900


Highly multiplexed simultaneous detection of RNAs and proteins in single cells.

Frei AP*, Bava FA*, Zunder ER, Hsieh EW, Chen SY, Nolan GP, Gherardini PF.
Nat Methods. 2016 Mar;13(3):269-75. doi: 10.1038/nmeth.3742. Epub 2016 Jan 25.
PMID:26808670


Sequential Functions of CPEB1 and CPEB4 Regulate Pathologic Expression of Vascular Endothelial Growth Factor and Angiogenesis in Chronic Liver Disease.

Calderone V, Gallego J, Fernandez-Miranda G, Garcia-Pras E, Maillo C, Berzigotti A, Mejias M, Bava FA, Angulo-Urarte A, Graupera M, Navarro P, Bosch J, Fernandez M, Mendez R.
Gastroenterology. 2016 Apr;150(4):982-97.e30. doi: 10.1053/j.gastro.2015.11.038. Epub 2015 Nov 26.
PMID:26627607


Global Analysis of CPEBs Reveals Sequential and Non-Redundant Functions in Mitotic Cell Cycle.

Giangarrà V, Igea A, Castellazzi CL, Bava FA@, Mendez R@.
PLoS One. 2015 Sep 23;10(9):e0138794. doi: 10.1371/journal.pone.0138794. eCollection 2015.
PMID:26398195


CPEB1 coordinates alternative 3'-UTR formation with translational regulation.

Bava FA, Eliscovich C, Ferreira PG, Miñana B, Ben-Dov C, Guigó R, Valcárcel J, Méndez R.
Nature. 2013 Mar 7;495(7439):121-5. doi: 10.1038/nature11901. Epub 2013 Feb 24.
PMID:23434754


Translational control by changes in poly(A) tail length: recycling mRNAs.

Weill L, Belloc E, Bava FA, Méndez R.
Nat Struct Mol Biol. 2012 Jun 5;19(6):577-85. doi: 10.1038/nsmb.2311. Review.
PMID:22664985


Human colon fibroblasts induce differentiation and proliferation of intestinal epithelial cells through the direct paracrine action of keratinocyte growth factor.

Visco V, Bava FA, d'Alessandro F, Cavallini M, Ziparo V, Torrisi MR.
J Cell Physiol. 2009 Jul;220(1):204-13. doi: 10.1002/jcp.21752.
PMID:19326389


@ co-corresponding authors
* co-first authors

 

Patents

Multiplexed Detection and Quantification of Nucleic Acids in Single-cell

Frei AP, Gherardini PF, Bava FA, Nolan GPMultiplexed
Serial No. 14/875,454


Multiplexed single molecule RNA visualization with a Two-Probe Proximity Ligation System

Samusik N, Bava FA,Goltsev Y, Nolan GP
Serial No. 62/300,596